Class: ContinuousPHVariable
pH measured variable from continuous autonomous sensor
classDiagram
class ContinuousPHVariable
click ContinuousPHVariable href "../ContinuousPHVariable"
MeasuredPHFields <|-- ContinuousPHVariable
click MeasuredPHFields href "../MeasuredPHFields"
ContinuousMeasuredVariable <|-- ContinuousPHVariable
click ContinuousMeasuredVariable href "../ContinuousMeasuredVariable"
ContinuousPHVariable : analyzing_instrument
ContinuousPHVariable --> "1" AnalyzingInstrument : analyzing_instrument
click AnalyzingInstrument href "../AnalyzingInstrument"
ContinuousPHVariable : analyzing_method
ContinuousPHVariable : appropriate_use_quality
ContinuousPHVariable --> "0..1" AppropriateUseQuality : appropriate_use_quality
click AppropriateUseQuality href "../AppropriateUseQuality"
ContinuousPHVariable : calculation_software_version
ContinuousPHVariable : dataset_variable_name
ContinuousPHVariable : dataset_variable_name_qc_flag
ContinuousPHVariable : dataset_variable_name_raw
ContinuousPHVariable : field_replicate_information
ContinuousPHVariable : genesis
ContinuousPHVariable --> "1" GenesisType : genesis
click GenesisType href "../GenesisType"
ContinuousPHVariable : long_name
ContinuousPHVariable : measurement_researcher
ContinuousPHVariable --> "0..1" Person : measurement_researcher
click Person href "../Person"
ContinuousPHVariable : method_reference
ContinuousPHVariable : missing_value_indicators
ContinuousPHVariable : observation_type
ContinuousPHVariable --> "1" ObservationType : observation_type
click ObservationType href "../ObservationType"
ContinuousPHVariable : other_detailed_information
ContinuousPHVariable : qc_researcher
ContinuousPHVariable --> "0..1" Person : qc_researcher
click Person href "../Person"
ContinuousPHVariable : qc_researcher_institution
ContinuousPHVariable : qc_steps_taken
ContinuousPHVariable : raw_data_calculation_method
ContinuousPHVariable : sampling
ContinuousPHVariable --> "1" SamplingType : sampling
click SamplingType href "../SamplingType"
ContinuousPHVariable : sampling_instrument_type
ContinuousPHVariable --> "1" SamplingInstrumentType : sampling_instrument_type
click SamplingInstrumentType href "../SamplingInstrumentType"
ContinuousPHVariable : sampling_instrument_type_custom
ContinuousPHVariable : sampling_method
ContinuousPHVariable : standard_identifier
ContinuousPHVariable --> "0..1" VocabularyItemReference : standard_identifier
click VocabularyItemReference href "../VocabularyItemReference"
ContinuousPHVariable : uncertainty
ContinuousPHVariable : uncertainty_definition
ContinuousPHVariable : units
Inheritance
- BaseVariable
- Variable
- ObservedPropertyVariable [ QCFields]
- ContinuousMeasuredVariable
- ContinuousPHVariable [ MeasuredPHFields]
- ContinuousMeasuredVariable
- ObservedPropertyVariable [ QCFields]
- Variable
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| appropriate_use_quality | 0..1 AppropriateUseQuality |
Climate quality is defined as measurements of quality sufficient to assess lo... | MeasuredPHFields |
| raw_data_calculation_method | 1 String |
The method used to calculate reported values from raw sensor data | ContinuousMeasuredVariable |
| calculation_software_version | 0..1 String |
Version of the software used to calculate reported values from raw values | ContinuousMeasuredVariable |
| analyzing_instrument | 1 AnalyzingInstrument |
Instrument used to analyze the water samples or measure the water body contin... | ObservedPropertyVariable |
| sampling_method | 1 String |
Method used to collect samples | ObservedPropertyVariable |
| field_replicate_information | 0..1 String |
Repetition of sample collection and measurement, e | ObservedPropertyVariable |
| analyzing_method | 1 String |
Additional information describing how the sample was analyzed | ObservedPropertyVariable |
| observation_type | 1 ObservationType |
ObservedPropertyVariable | |
| sampling | 1 SamplingType |
ObservedPropertyVariable | |
| genesis | 1 GenesisType |
ObservedPropertyVariable | |
| sampling_instrument_type | 1 SamplingInstrumentType |
ObservedPropertyVariable | |
| sampling_instrument_type_custom | 0..1 String |
ObservedPropertyVariable | |
| qc_steps_taken | 1 String |
Describe what QC steps have been taken to improve the quality of the data (e | QCFields |
| uncertainty | 1 String |
It is recommended to provide uncertainty for each data point in the data file | QCFields |
| uncertainty_definition | 1 String |
A description of the uncertainties involved in this method | QCFields |
| missing_value_indicators | 1 String |
The indicator used to represent missing values in the data file, e | QCFields |
| qc_researcher | 0..1 Person |
The name of the PI whose research team QCed this parameter | QCFields |
| qc_researcher_institution | 0..1 String |
The institution of the PI whose research team QCed this parameter | QCFields |
| dataset_variable_name_qc_flag | 0..1 String |
If applicable, the column header name used for the quality control flag corre... | Variable |
| dataset_variable_name_raw | 0..1 String |
If applicable, the column header name used for the raw data corresponding to ... | Variable |
| method_reference | 0..1 String |
Citation for the method used | Variable |
| measurement_researcher | 0..1 Person |
The name of the PI whose research team measured or derived this parameter | Variable |
| other_detailed_information | 0..1 String |
Any additional information about this variable | Variable |
| units | 1 String |
Unit of measurement for this variable | BaseVariable |
| standard_identifier | 0..1 VocabularyItemReference |
BaseVariable | |
| dataset_variable_name | 1 String |
The name for the variable as it is identified in the dataset data file | BaseVariable |
| long_name | 1 String |
Full descriptive name of the variable | BaseVariable |
Identifier and Mapping Information
Schema Source
- from schema: OAEDataManagementProtocol
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | oae:ContinuousPHVariable |
| native | oae:ContinuousPHVariable |
LinkML Source
Direct
name: ContinuousPHVariable
description: pH measured variable from continuous autonomous sensor
from_schema: OAEDataManagementProtocol
is_a: ContinuousMeasuredVariable
mixins:
- MeasuredPHFields
Induced
name: ContinuousPHVariable
description: pH measured variable from continuous autonomous sensor
from_schema: OAEDataManagementProtocol
is_a: ContinuousMeasuredVariable
mixins:
- MeasuredPHFields
attributes:
appropriate_use_quality:
name: appropriate_use_quality
description: 'Climate quality is defined as measurements of quality sufficient
to assess long term trends with a defined level of confidence. Weather quality
is defined as measurements of quality sufficient to identify relative spatial
patterns and short term variation.
For more details, refer to Newton J.A., Feely R. A., Jewett E. B., Williamson
P. & Mathis J., 2015. Global Ocean Acidification Observing Network: Requirements
and Governance Plan. Second Edition, GOA-ON, http://www.goa-on.org/docs/GOA-ON_plan_print.pdf.'
title: Weather or climate quality
from_schema: OAEDataManagementProtocol
rank: 1000
alias: appropriate_use_quality
owner: ContinuousPHVariable
domain_of:
- MeasuredTAFields
- MeasuredDICFields
- MeasuredPHFields
- MeasuredCO2Fields
range: AppropriateUseQuality
raw_data_calculation_method:
name: raw_data_calculation_method
description: The method used to calculate reported values from raw sensor data.
title: Method to calculate reported values from raw data
from_schema: Variable
rank: 1000
alias: raw_data_calculation_method
owner: ContinuousPHVariable
domain_of:
- ContinuousMeasuredVariable
range: string
required: true
calculation_software_version:
name: calculation_software_version
description: Version of the software used to calculate reported values from raw
values.
title: Software version for the calculation
from_schema: Variable
rank: 1000
alias: calculation_software_version
owner: ContinuousPHVariable
domain_of:
- ContinuousMeasuredVariable
range: string
analyzing_instrument:
name: analyzing_instrument
description: Instrument used to analyze the water samples or measure the water
body continuously. Instrument includes calibration information.
title: Analyzing instrument
from_schema: OAEDataManagementProtocol
rank: 1000
alias: analyzing_instrument
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
range: AnalyzingInstrument
required: true
sampling_method:
name: sampling_method
description: Method used to collect samples.
title: Sampling Method
from_schema: Variable
rank: 1000
alias: sampling_method
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
range: string
required: true
field_replicate_information:
name: field_replicate_information
description: Repetition of sample collection and measurement, e.g., triplicate
samples.
title: Field replicate information
from_schema: Variable
rank: 1000
alias: field_replicate_information
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
range: string
analyzing_method:
name: analyzing_method
description: Additional information describing how the sample was analyzed. DOIs
provided as applicable.
title: Analyzing Method
from_schema: Variable
rank: 1000
alias: analyzing_method
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
range: string
required: true
observation_type:
name: observation_type
title: Observation Type
from_schema: Variable
rank: 1000
alias: observation_type
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
range: ObservationType
required: true
sampling:
name: sampling
from_schema: Variable
rank: 1000
alias: sampling
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
range: SamplingType
required: true
genesis:
name: genesis
from_schema: Variable
rank: 1000
alias: genesis
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
- CalculatedVariable
range: GenesisType
required: true
sampling_instrument_type:
name: sampling_instrument_type
title: Sampling instrument type
from_schema: Variable
rank: 1000
alias: sampling_instrument_type
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
range: SamplingInstrumentType
required: true
sampling_instrument_type_custom:
name: sampling_instrument_type_custom
title: Sampling instrument type (custom)
from_schema: Variable
rank: 1000
alias: sampling_instrument_type_custom
owner: ContinuousPHVariable
domain_of:
- ObservedPropertyVariable
range: string
qc_steps_taken:
name: qc_steps_taken
description: 'Describe what QC steps have been taken to improve the quality of
the data (e.g., DOI, software and settings used, outlier removal, etc.).
If quality control procedures are described in a separate document uploaded
with the data, provide the name of the document here.'
title: QC steps taken
from_schema: OAEDataManagementProtocol
rank: 1000
alias: qc_steps_taken
owner: ContinuousPHVariable
domain_of:
- QCFields
range: string
required: true
uncertainty:
name: uncertainty
description: 'It is recommended to provide uncertainty for each data point in
the data file. Else provide a single value representative of the dataset.
If uncertainty is provided as a variable, please list the column header name
here.'
title: Uncertainty
from_schema: OAEDataManagementProtocol
rank: 1000
alias: uncertainty
owner: ContinuousPHVariable
domain_of:
- StandardGas
- CO2GasDetector
- QCFields
range: string
required: true
uncertainty_definition:
name: uncertainty_definition
description: A description of the uncertainties involved in this method.
title: How was the uncertainty defined
from_schema: OAEDataManagementProtocol
rank: 1000
alias: uncertainty_definition
owner: ContinuousPHVariable
domain_of:
- QCFields
range: string
required: true
missing_value_indicators:
name: missing_value_indicators
description: The indicator used to represent missing values in the data file,
e.g., -999, NaN, etc.
title: Missing value indicators
from_schema: OAEDataManagementProtocol
rank: 1000
alias: missing_value_indicators
owner: ContinuousPHVariable
domain_of:
- QCFields
range: string
required: true
qc_researcher:
name: qc_researcher
description: The name of the PI whose research team QCed this parameter.
title: Researcher who QCed this variable
from_schema: Variable
rank: 1000
alias: qc_researcher
owner: ContinuousPHVariable
domain_of:
- QCFields
range: Person
qc_researcher_institution:
name: qc_researcher_institution
description: The institution of the PI whose research team QCed this parameter.
title: QC Researcher Institution
from_schema: Variable
rank: 1000
alias: qc_researcher_institution
owner: ContinuousPHVariable
domain_of:
- QCFields
range: string
dataset_variable_name_qc_flag:
name: dataset_variable_name_qc_flag
description: If applicable, the column header name used for the quality control
flag corresponding to this variable.
title: Dataset variable name (Quality Flag)
from_schema: Variable
rank: 1000
alias: dataset_variable_name_qc_flag
owner: ContinuousPHVariable
domain_of:
- Variable
range: string
dataset_variable_name_raw:
name: dataset_variable_name_raw
description: If applicable, the column header name used for the raw data corresponding
to this variable.
title: Dataset variable name (raw)
from_schema: Variable
rank: 1000
alias: dataset_variable_name_raw
owner: ContinuousPHVariable
domain_of:
- Variable
range: string
method_reference:
name: method_reference
description: Citation for the method used.
title: Method Reference
from_schema: Variable
alias: method_reference
owner: ContinuousPHVariable
domain_of:
- Calibration
- Variable
range: string
measurement_researcher:
name: measurement_researcher
description: The name of the PI whose research team measured or derived this parameter.
title: Researcher who measured the variable
from_schema: Variable
rank: 1000
alias: measurement_researcher
owner: ContinuousPHVariable
domain_of:
- Variable
range: Person
other_detailed_information:
name: other_detailed_information
description: Any additional information about this variable.
title: Other Detailed Information
from_schema: Variable
rank: 1000
alias: other_detailed_information
owner: ContinuousPHVariable
domain_of:
- Variable
range: string
units:
name: units
description: Unit of measurement for this variable.
title: Unit
from_schema: OAEDataManagementProtocol
rank: 1000
alias: units
owner: ContinuousPHVariable
domain_of:
- BaseVariable
range: string
required: true
standard_identifier:
name: standard_identifier
from_schema: Variable
rank: 1000
alias: standard_identifier
owner: ContinuousPHVariable
domain_of:
- BaseVariable
range: VocabularyItemReference
dataset_variable_name:
name: dataset_variable_name
description: The name for the variable as it is identified in the dataset data
file. This could be the column header in a CSV or the variable name in a NetCDF
file. Standard common recommended column header names can be found in protocol
documentation [here](https://www.carbontosea.org/oae-data-protocol/1-0-0/#column-header-name).
title: Dataset variable name
from_schema: Variable
rank: 1000
alias: dataset_variable_name
owner: ContinuousPHVariable
domain_of:
- BaseVariable
range: string
required: true
long_name:
name: long_name
description: Full descriptive name of the variable.
title: Variable full name
from_schema: Variable
rank: 1000
alias: long_name
owner: ContinuousPHVariable
domain_of:
- BaseVariable
range: string
required: true