Class: DiscreteCO2Variable
CO2 discrete (bottle) measured variable (pCO2/fCO2). Reference: OAPMetadata XSD variables.xsd - co2_discrete
classDiagram
class DiscreteCO2Variable
click DiscreteCO2Variable href "../DiscreteCO2Variable"
MeasuredCO2Fields <|-- DiscreteCO2Variable
click MeasuredCO2Fields href "../MeasuredCO2Fields"
DiscreteMeasuredVariable <|-- DiscreteCO2Variable
click DiscreteMeasuredVariable href "../DiscreteMeasuredVariable"
DiscreteCO2Variable : analyzing_instrument
DiscreteCO2Variable --> "1" CO2GasDetector : analyzing_instrument
click CO2GasDetector href "../CO2GasDetector"
DiscreteCO2Variable : analyzing_method
DiscreteCO2Variable : appropriate_use_quality
DiscreteCO2Variable --> "0..1" AppropriateUseQuality : appropriate_use_quality
click AppropriateUseQuality href "../AppropriateUseQuality"
DiscreteCO2Variable : co2_reported_temperature
DiscreteCO2Variable : dataset_variable_name
DiscreteCO2Variable : dataset_variable_name_qc_flag
DiscreteCO2Variable : dataset_variable_name_raw
DiscreteCO2Variable : field_replicate_information
DiscreteCO2Variable : genesis
DiscreteCO2Variable --> "1" GenesisType : genesis
click GenesisType href "../GenesisType"
DiscreteCO2Variable : headspace_volume
DiscreteCO2Variable : long_name
DiscreteCO2Variable : measurement_researcher
DiscreteCO2Variable --> "0..1" Person : measurement_researcher
click Person href "../Person"
DiscreteCO2Variable : measurement_temperature
DiscreteCO2Variable : method_reference
DiscreteCO2Variable : missing_value_indicators
DiscreteCO2Variable : observation_type
DiscreteCO2Variable --> "1" ObservationType : observation_type
click ObservationType href "../ObservationType"
DiscreteCO2Variable : other_detailed_information
DiscreteCO2Variable : qc_researcher
DiscreteCO2Variable --> "0..1" Person : qc_researcher
click Person href "../Person"
DiscreteCO2Variable : qc_researcher_institution
DiscreteCO2Variable : qc_steps_taken
DiscreteCO2Variable : sampling
DiscreteCO2Variable --> "1" SamplingType : sampling
click SamplingType href "../SamplingType"
DiscreteCO2Variable : sampling_instrument_type
DiscreteCO2Variable --> "1" SamplingInstrumentType : sampling_instrument_type
click SamplingInstrumentType href "../SamplingInstrumentType"
DiscreteCO2Variable : sampling_instrument_type_custom
DiscreteCO2Variable : sampling_method
DiscreteCO2Variable : seawater_volume
DiscreteCO2Variable : standard_identifier
DiscreteCO2Variable --> "0..1" VocabularyItemReference : standard_identifier
click VocabularyItemReference href "../VocabularyItemReference"
DiscreteCO2Variable : storage_method
DiscreteCO2Variable : temperature_correction_method
DiscreteCO2Variable : uncertainty
DiscreteCO2Variable : uncertainty_definition
DiscreteCO2Variable : units
DiscreteCO2Variable : water_vapor_correction_method
Inheritance
- BaseVariable
- Variable
- ObservedPropertyVariable [ QCFields]
- DiscreteMeasuredVariable
- DiscreteCO2Variable [ MeasuredCO2Fields]
- DiscreteMeasuredVariable
- ObservedPropertyVariable [ QCFields]
- Variable
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| storage_method | 1 String |
How the samples were stored before the measurement | direct |
| seawater_volume | 0..1 Integer |
Volume (in mL) of seawater in the flask | direct |
| headspace_volume | 0..1 Integer |
Volume (in mL) of headspace (water displaced in the flask plus volume of the ... | direct |
| measurement_temperature | 1 Integer |
Temperature at which the samples were analyzed in Celsius | direct |
| appropriate_use_quality | 0..1 AppropriateUseQuality |
Climate quality is defined as measurements of quality sufficient to assess lo... | MeasuredCO2Fields |
| co2_reported_temperature | 1 String |
In Celsius | MeasuredCO2Fields |
| water_vapor_correction_method | 0..1 String |
How the water vapor pressure inside the equilibrator was determined | MeasuredCO2Fields |
| temperature_correction_method | 0..1 String |
How the temperature effect was corrected | MeasuredCO2Fields |
| analyzing_instrument | 1 CO2GasDetector |
CO2 gas detector with standard gas calibration | ObservedPropertyVariable |
| sampling_method | 1 String |
Method used to collect samples | ObservedPropertyVariable |
| field_replicate_information | 0..1 String |
Repetition of sample collection and measurement, e | ObservedPropertyVariable |
| analyzing_method | 1 String |
Additional information describing how the sample was analyzed | ObservedPropertyVariable |
| observation_type | 1 ObservationType |
ObservedPropertyVariable | |
| sampling | 1 SamplingType |
ObservedPropertyVariable | |
| genesis | 1 GenesisType |
ObservedPropertyVariable | |
| sampling_instrument_type | 1 SamplingInstrumentType |
ObservedPropertyVariable | |
| sampling_instrument_type_custom | 0..1 String |
ObservedPropertyVariable | |
| qc_steps_taken | 1 String |
Describe what QC steps have been taken to improve the quality of the data (e | QCFields |
| uncertainty | 1 String |
It is recommended to provide uncertainty for each data point in the data file | QCFields |
| uncertainty_definition | 1 String |
A description of the uncertainties involved in this method | QCFields |
| missing_value_indicators | 1 String |
The indicator used to represent missing values in the data file, e | QCFields |
| qc_researcher | 0..1 Person |
The name of the PI whose research team QCed this parameter | QCFields |
| qc_researcher_institution | 0..1 String |
The institution of the PI whose research team QCed this parameter | QCFields |
| dataset_variable_name_qc_flag | 0..1 String |
If applicable, the column header name used for the quality control flag corre... | Variable |
| dataset_variable_name_raw | 0..1 String |
If applicable, the column header name used for the raw data corresponding to ... | Variable |
| method_reference | 0..1 String |
Citation for the method used | Variable |
| measurement_researcher | 0..1 Person |
The name of the PI whose research team measured or derived this parameter | Variable |
| other_detailed_information | 0..1 String |
Any additional information about this variable | Variable |
| units | 1 String |
Unit of measurement for this variable | BaseVariable |
| standard_identifier | 0..1 VocabularyItemReference |
BaseVariable | |
| dataset_variable_name | 1 String |
The name for the variable as it is identified in the dataset data file | BaseVariable |
| long_name | 1 String |
Full descriptive name of the variable | BaseVariable |
Identifier and Mapping Information
Schema Source
- from schema: OAEDataManagementProtocol
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | oae:DiscreteCO2Variable |
| native | oae:DiscreteCO2Variable |
LinkML Source
Direct
name: DiscreteCO2Variable
description: 'CO2 discrete (bottle) measured variable (pCO2/fCO2). Reference: OAPMetadata
XSD variables.xsd - co2_discrete'
from_schema: OAEDataManagementProtocol
is_a: DiscreteMeasuredVariable
mixins:
- MeasuredCO2Fields
slot_usage:
analyzing_instrument:
name: analyzing_instrument
description: CO2 gas detector with standard gas calibration.
range: CO2GasDetector
attributes:
storage_method:
name: storage_method
description: How the samples were stored before the measurement.
title: Storage method
from_schema: Variable
rank: 1000
domain_of:
- DiscreteCO2Variable
range: string
required: true
seawater_volume:
name: seawater_volume
description: Volume (in mL) of seawater in the flask.
title: Seawater volume
from_schema: Variable
rank: 1000
domain_of:
- DiscreteCO2Variable
range: integer
headspace_volume:
name: headspace_volume
description: Volume (in mL) of headspace (water displaced in the flask plus volume
of the tubing).
title: Headspace volume
from_schema: Variable
rank: 1000
domain_of:
- DiscreteCO2Variable
range: integer
measurement_temperature:
name: measurement_temperature
description: Temperature at which the samples were analyzed in Celsius.
title: Temperature of measurement
from_schema: Variable
domain_of:
- DiscretePHVariable
- DiscreteCO2Variable
range: integer
required: true
Induced
name: DiscreteCO2Variable
description: 'CO2 discrete (bottle) measured variable (pCO2/fCO2). Reference: OAPMetadata
XSD variables.xsd - co2_discrete'
from_schema: OAEDataManagementProtocol
is_a: DiscreteMeasuredVariable
mixins:
- MeasuredCO2Fields
slot_usage:
analyzing_instrument:
name: analyzing_instrument
description: CO2 gas detector with standard gas calibration.
range: CO2GasDetector
attributes:
storage_method:
name: storage_method
description: How the samples were stored before the measurement.
title: Storage method
from_schema: Variable
rank: 1000
alias: storage_method
owner: DiscreteCO2Variable
domain_of:
- DiscreteCO2Variable
range: string
required: true
seawater_volume:
name: seawater_volume
description: Volume (in mL) of seawater in the flask.
title: Seawater volume
from_schema: Variable
rank: 1000
alias: seawater_volume
owner: DiscreteCO2Variable
domain_of:
- DiscreteCO2Variable
range: integer
headspace_volume:
name: headspace_volume
description: Volume (in mL) of headspace (water displaced in the flask plus volume
of the tubing).
title: Headspace volume
from_schema: Variable
rank: 1000
alias: headspace_volume
owner: DiscreteCO2Variable
domain_of:
- DiscreteCO2Variable
range: integer
measurement_temperature:
name: measurement_temperature
description: Temperature at which the samples were analyzed in Celsius.
title: Temperature of measurement
from_schema: Variable
alias: measurement_temperature
owner: DiscreteCO2Variable
domain_of:
- DiscretePHVariable
- DiscreteCO2Variable
range: integer
required: true
appropriate_use_quality:
name: appropriate_use_quality
description: 'Climate quality is defined as measurements of quality sufficient
to assess long term trends with a defined level of confidence. Weather quality
is defined as measurements of quality sufficient to identify relative spatial
patterns and short term variation.
For more details, refer to Newton J.A., Feely R. A., Jewett E. B., Williamson
P. & Mathis J., 2015. Global Ocean Acidification Observing Network: Requirements
and Governance Plan. Second Edition, GOA-ON, http://www.goa-on.org/docs/GOA-ON_plan_print.pdf.'
title: Weather or climate quality
from_schema: OAEDataManagementProtocol
rank: 1000
alias: appropriate_use_quality
owner: DiscreteCO2Variable
domain_of:
- MeasuredTAFields
- MeasuredDICFields
- MeasuredPHFields
- MeasuredCO2Fields
range: AppropriateUseQuality
co2_reported_temperature:
name: co2_reported_temperature
description: In Celsius. The input could be a constant temperature value, or something
like, in-situ temperature, temperature of analysis, etc.
title: Temperature at which CO2 was reported
from_schema: Variable
rank: 1000
alias: co2_reported_temperature
owner: DiscreteCO2Variable
domain_of:
- MeasuredCO2Fields
range: string
required: true
water_vapor_correction_method:
name: water_vapor_correction_method
description: How the water vapor pressure inside the equilibrator was determined.
title: Water vapor correction method
from_schema: Variable
rank: 1000
alias: water_vapor_correction_method
owner: DiscreteCO2Variable
domain_of:
- MeasuredCO2Fields
range: string
temperature_correction_method:
name: temperature_correction_method
description: How the temperature effect was corrected.
title: Temperature correction method
from_schema: Variable
alias: temperature_correction_method
owner: DiscreteCO2Variable
domain_of:
- DiscretePHVariable
- MeasuredCO2Fields
range: string
analyzing_instrument:
name: analyzing_instrument
description: CO2 gas detector with standard gas calibration.
title: Analyzing instrument
from_schema: OAEDataManagementProtocol
rank: 1000
alias: analyzing_instrument
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
range: CO2GasDetector
required: true
sampling_method:
name: sampling_method
description: Method used to collect samples.
title: Sampling Method
from_schema: Variable
rank: 1000
alias: sampling_method
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
range: string
required: true
field_replicate_information:
name: field_replicate_information
description: Repetition of sample collection and measurement, e.g., triplicate
samples.
title: Field replicate information
from_schema: Variable
rank: 1000
alias: field_replicate_information
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
range: string
analyzing_method:
name: analyzing_method
description: Additional information describing how the sample was analyzed. DOIs
provided as applicable.
title: Analyzing Method
from_schema: Variable
rank: 1000
alias: analyzing_method
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
range: string
required: true
observation_type:
name: observation_type
title: Observation Type
from_schema: Variable
rank: 1000
alias: observation_type
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
range: ObservationType
required: true
sampling:
name: sampling
from_schema: Variable
rank: 1000
alias: sampling
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
range: SamplingType
required: true
genesis:
name: genesis
from_schema: Variable
rank: 1000
alias: genesis
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
- CalculatedVariable
range: GenesisType
required: true
sampling_instrument_type:
name: sampling_instrument_type
title: Sampling instrument type
from_schema: Variable
rank: 1000
alias: sampling_instrument_type
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
range: SamplingInstrumentType
required: true
sampling_instrument_type_custom:
name: sampling_instrument_type_custom
title: Sampling instrument type (custom)
from_schema: Variable
rank: 1000
alias: sampling_instrument_type_custom
owner: DiscreteCO2Variable
domain_of:
- ObservedPropertyVariable
range: string
qc_steps_taken:
name: qc_steps_taken
description: 'Describe what QC steps have been taken to improve the quality of
the data (e.g., DOI, software and settings used, outlier removal, etc.).
If quality control procedures are described in a separate document uploaded
with the data, provide the name of the document here.'
title: QC steps taken
from_schema: OAEDataManagementProtocol
rank: 1000
alias: qc_steps_taken
owner: DiscreteCO2Variable
domain_of:
- QCFields
range: string
required: true
uncertainty:
name: uncertainty
description: 'It is recommended to provide uncertainty for each data point in
the data file. Else provide a single value representative of the dataset.
If uncertainty is provided as a variable, please list the column header name
here.'
title: Uncertainty
from_schema: OAEDataManagementProtocol
rank: 1000
alias: uncertainty
owner: DiscreteCO2Variable
domain_of:
- StandardGas
- CO2GasDetector
- QCFields
range: string
required: true
uncertainty_definition:
name: uncertainty_definition
description: A description of the uncertainties involved in this method.
title: How was the uncertainty defined
from_schema: OAEDataManagementProtocol
rank: 1000
alias: uncertainty_definition
owner: DiscreteCO2Variable
domain_of:
- QCFields
range: string
required: true
missing_value_indicators:
name: missing_value_indicators
description: The indicator used to represent missing values in the data file,
e.g., -999, NaN, etc.
title: Missing value indicators
from_schema: OAEDataManagementProtocol
rank: 1000
alias: missing_value_indicators
owner: DiscreteCO2Variable
domain_of:
- QCFields
range: string
required: true
qc_researcher:
name: qc_researcher
description: The name of the PI whose research team QCed this parameter.
title: Researcher who QCed this variable
from_schema: Variable
rank: 1000
alias: qc_researcher
owner: DiscreteCO2Variable
domain_of:
- QCFields
range: Person
qc_researcher_institution:
name: qc_researcher_institution
description: The institution of the PI whose research team QCed this parameter.
title: QC Researcher Institution
from_schema: Variable
rank: 1000
alias: qc_researcher_institution
owner: DiscreteCO2Variable
domain_of:
- QCFields
range: string
dataset_variable_name_qc_flag:
name: dataset_variable_name_qc_flag
description: If applicable, the column header name used for the quality control
flag corresponding to this variable.
title: Dataset variable name (Quality Flag)
from_schema: Variable
rank: 1000
alias: dataset_variable_name_qc_flag
owner: DiscreteCO2Variable
domain_of:
- Variable
range: string
dataset_variable_name_raw:
name: dataset_variable_name_raw
description: If applicable, the column header name used for the raw data corresponding
to this variable.
title: Dataset variable name (raw)
from_schema: Variable
rank: 1000
alias: dataset_variable_name_raw
owner: DiscreteCO2Variable
domain_of:
- Variable
range: string
method_reference:
name: method_reference
description: Citation for the method used.
title: Method Reference
from_schema: Variable
alias: method_reference
owner: DiscreteCO2Variable
domain_of:
- Calibration
- Variable
range: string
measurement_researcher:
name: measurement_researcher
description: The name of the PI whose research team measured or derived this parameter.
title: Researcher who measured the variable
from_schema: Variable
rank: 1000
alias: measurement_researcher
owner: DiscreteCO2Variable
domain_of:
- Variable
range: Person
other_detailed_information:
name: other_detailed_information
description: Any additional information about this variable.
title: Other Detailed Information
from_schema: Variable
rank: 1000
alias: other_detailed_information
owner: DiscreteCO2Variable
domain_of:
- Variable
range: string
units:
name: units
description: Unit of measurement for this variable.
title: Unit
from_schema: OAEDataManagementProtocol
rank: 1000
alias: units
owner: DiscreteCO2Variable
domain_of:
- BaseVariable
range: string
required: true
standard_identifier:
name: standard_identifier
from_schema: Variable
rank: 1000
alias: standard_identifier
owner: DiscreteCO2Variable
domain_of:
- BaseVariable
range: VocabularyItemReference
dataset_variable_name:
name: dataset_variable_name
description: The name for the variable as it is identified in the dataset data
file. This could be the column header in a CSV or the variable name in a NetCDF
file. Standard common recommended column header names can be found in protocol
documentation [here](https://www.carbontosea.org/oae-data-protocol/1-0-0/#column-header-name).
title: Dataset variable name
from_schema: Variable
rank: 1000
alias: dataset_variable_name
owner: DiscreteCO2Variable
domain_of:
- BaseVariable
range: string
required: true
long_name:
name: long_name
description: Full descriptive name of the variable.
title: Variable full name
from_schema: Variable
rank: 1000
alias: long_name
owner: DiscreteCO2Variable
domain_of:
- BaseVariable
range: string
required: true