Class: DiscreteTAVariable
Total Alkalinity (TA) measured variable from discrete bottle samples
classDiagram
class DiscreteTAVariable
click DiscreteTAVariable href "../DiscreteTAVariable"
MeasuredTAFields <|-- DiscreteTAVariable
click MeasuredTAFields href "../MeasuredTAFields"
DiscreteMeasuredVariable <|-- DiscreteTAVariable
click DiscreteMeasuredVariable href "../DiscreteMeasuredVariable"
DiscreteTAVariable : analyzing_instrument
DiscreteTAVariable --> "1" CRMInstrument : analyzing_instrument
click CRMInstrument href "../CRMInstrument"
DiscreteTAVariable : analyzing_method
DiscreteTAVariable : appropriate_use_quality
DiscreteTAVariable --> "0..1" AppropriateUseQuality : appropriate_use_quality
click AppropriateUseQuality href "../AppropriateUseQuality"
DiscreteTAVariable : blank_correction
DiscreteTAVariable : concentration_basis
DiscreteTAVariable --> "1" ConcentrationBasis : concentration_basis
click ConcentrationBasis href "../ConcentrationBasis"
DiscreteTAVariable : curve_fitting_method
DiscreteTAVariable : dataset_variable_name
DiscreteTAVariable : dataset_variable_name_qc_flag
DiscreteTAVariable : dataset_variable_name_raw
DiscreteTAVariable : field_replicate_information
DiscreteTAVariable : genesis
DiscreteTAVariable --> "1" GenesisType : genesis
click GenesisType href "../GenesisType"
DiscreteTAVariable : long_name
DiscreteTAVariable : measurement_researcher
DiscreteTAVariable --> "0..1" Person : measurement_researcher
click Person href "../Person"
DiscreteTAVariable : method_reference
DiscreteTAVariable : missing_value_indicators
DiscreteTAVariable : observation_type
DiscreteTAVariable --> "1" ObservationType : observation_type
click ObservationType href "../ObservationType"
DiscreteTAVariable : other_detailed_information
DiscreteTAVariable : qc_researcher
DiscreteTAVariable --> "0..1" Person : qc_researcher
click Person href "../Person"
DiscreteTAVariable : qc_researcher_institution
DiscreteTAVariable : qc_steps_taken
DiscreteTAVariable : sample_preservation
DiscreteTAVariable --> "1" SamplePreservation : sample_preservation
click SamplePreservation href "../SamplePreservation"
DiscreteTAVariable : sampling
DiscreteTAVariable --> "1" SamplingType : sampling
click SamplingType href "../SamplingType"
DiscreteTAVariable : sampling_instrument_type
DiscreteTAVariable --> "1" SamplingInstrumentType : sampling_instrument_type
click SamplingInstrumentType href "../SamplingInstrumentType"
DiscreteTAVariable : sampling_instrument_type_custom
DiscreteTAVariable : sampling_method
DiscreteTAVariable : standard_identifier
DiscreteTAVariable --> "0..1" VocabularyItemReference : standard_identifier
click VocabularyItemReference href "../VocabularyItemReference"
DiscreteTAVariable : titration_cell_type
DiscreteTAVariable --> "0..1" TitrationCellType : titration_cell_type
click TitrationCellType href "../TitrationCellType"
DiscreteTAVariable : titration_type
DiscreteTAVariable : uncertainty
DiscreteTAVariable : uncertainty_definition
DiscreteTAVariable : units
Inheritance
- BaseVariable
- Variable
- ObservedPropertyVariable [ QCFields]
- DiscreteMeasuredVariable
- DiscreteTAVariable [ MeasuredTAFields]
- DiscreteMeasuredVariable
- ObservedPropertyVariable [ QCFields]
- Variable
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| sample_preservation | 1 SamplePreservation |
How the samples were preserved for analysis | direct |
| blank_correction | 1 String |
Whether the reported variables were corrected for blank, and if so, how they ... | direct |
| titration_type | 1 String |
Type of the titration used to determine alkalinity | direct |
| titration_cell_type | 0..1 TitrationCellType |
Whether the titration cell is open or closed | direct |
| curve_fitting_method | 0..1 String |
Curve fitting method used to determine the alkalinity | direct |
| appropriate_use_quality | 0..1 AppropriateUseQuality |
Climate quality is defined as measurements of quality sufficient to assess lo... | MeasuredTAFields |
| concentration_basis | 1 ConcentrationBasis |
Whether measurements are expressed per unit volume or per unit mass (for DIC,... | MeasuredTAFields |
| analyzing_instrument | 1 CRMInstrument |
CRM-calibrated instrument used to analyze TA samples | ObservedPropertyVariable |
| sampling_method | 1 String |
Method used to collect samples | ObservedPropertyVariable |
| field_replicate_information | 0..1 String |
Repetition of sample collection and measurement, e | ObservedPropertyVariable |
| analyzing_method | 1 String |
Additional information describing how the sample was analyzed | ObservedPropertyVariable |
| observation_type | 1 ObservationType |
ObservedPropertyVariable | |
| sampling | 1 SamplingType |
ObservedPropertyVariable | |
| genesis | 1 GenesisType |
ObservedPropertyVariable | |
| sampling_instrument_type | 1 SamplingInstrumentType |
ObservedPropertyVariable | |
| sampling_instrument_type_custom | 0..1 String |
ObservedPropertyVariable | |
| qc_steps_taken | 1 String |
Describe what QC steps have been taken to improve the quality of the data (e | QCFields |
| uncertainty | 1 String |
It is recommended to provide uncertainty for each data point in the data file | QCFields |
| uncertainty_definition | 1 String |
A description of the uncertainties involved in this method | QCFields |
| missing_value_indicators | 1 String |
The indicator used to represent missing values in the data file, e | QCFields |
| qc_researcher | 0..1 Person |
The name of the PI whose research team QCed this parameter | QCFields |
| qc_researcher_institution | 0..1 String |
The institution of the PI whose research team QCed this parameter | QCFields |
| dataset_variable_name_qc_flag | 0..1 String |
If applicable, the column header name used for the quality control flag corre... | Variable |
| dataset_variable_name_raw | 0..1 String |
If applicable, the column header name used for the raw data corresponding to ... | Variable |
| method_reference | 0..1 String |
Citation for the method used | Variable |
| measurement_researcher | 0..1 Person |
The name of the PI whose research team measured or derived this parameter | Variable |
| other_detailed_information | 0..1 String |
Any additional information about this variable | Variable |
| units | 1 String |
Unit of measurement for this variable | BaseVariable |
| standard_identifier | 0..1 VocabularyItemReference |
BaseVariable | |
| dataset_variable_name | 1 String |
The name for the variable as it is identified in the dataset data file | BaseVariable |
| long_name | 1 String |
Full descriptive name of the variable | BaseVariable |
Identifier and Mapping Information
Schema Source
- from schema: OAEDataManagementProtocol
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | oae:DiscreteTAVariable |
| native | oae:DiscreteTAVariable |
LinkML Source
Direct
name: DiscreteTAVariable
description: Total Alkalinity (TA) measured variable from discrete bottle samples
from_schema: OAEDataManagementProtocol
is_a: DiscreteMeasuredVariable
mixins:
- MeasuredTAFields
slots:
- sample_preservation
- blank_correction
slot_usage:
analyzing_instrument:
name: analyzing_instrument
description: CRM-calibrated instrument used to analyze TA samples.
range: CRMInstrument
attributes:
titration_type:
name: titration_type
description: Type of the titration used to determine alkalinity.
title: Titration type
from_schema: Variable
rank: 1000
domain_of:
- DiscreteTAVariable
range: string
required: true
titration_cell_type:
name: titration_cell_type
description: Whether the titration cell is open or closed.
title: Cell type
from_schema: Variable
rank: 1000
domain_of:
- DiscreteTAVariable
range: TitrationCellType
curve_fitting_method:
name: curve_fitting_method
description: Curve fitting method used to determine the alkalinity.
title: Curve fitting method
from_schema: Variable
rank: 1000
domain_of:
- DiscreteTAVariable
range: string
Induced
name: DiscreteTAVariable
description: Total Alkalinity (TA) measured variable from discrete bottle samples
from_schema: OAEDataManagementProtocol
is_a: DiscreteMeasuredVariable
mixins:
- MeasuredTAFields
slot_usage:
analyzing_instrument:
name: analyzing_instrument
description: CRM-calibrated instrument used to analyze TA samples.
range: CRMInstrument
attributes:
titration_type:
name: titration_type
description: Type of the titration used to determine alkalinity.
title: Titration type
from_schema: Variable
rank: 1000
alias: titration_type
owner: DiscreteTAVariable
domain_of:
- DiscreteTAVariable
range: string
required: true
titration_cell_type:
name: titration_cell_type
description: Whether the titration cell is open or closed.
title: Cell type
from_schema: Variable
rank: 1000
alias: titration_cell_type
owner: DiscreteTAVariable
domain_of:
- DiscreteTAVariable
range: TitrationCellType
curve_fitting_method:
name: curve_fitting_method
description: Curve fitting method used to determine the alkalinity.
title: Curve fitting method
from_schema: Variable
rank: 1000
alias: curve_fitting_method
owner: DiscreteTAVariable
domain_of:
- DiscreteTAVariable
range: string
sample_preservation:
name: sample_preservation
description: How the samples were preserved for analysis.
title: Sample preservation
from_schema: OAEDataManagementProtocol
rank: 1000
alias: sample_preservation
owner: DiscreteTAVariable
domain_of:
- DiscreteTAVariable
- DiscreteDICVariable
range: SamplePreservation
required: true
blank_correction:
name: blank_correction
description: Whether the reported variables were corrected for blank, and if so,
how they were corrected.
title: Magnitude of blank correction
from_schema: OAEDataManagementProtocol
rank: 1000
alias: blank_correction
owner: DiscreteTAVariable
domain_of:
- DiscreteTAVariable
- DiscreteDICVariable
range: string
required: true
appropriate_use_quality:
name: appropriate_use_quality
description: 'Climate quality is defined as measurements of quality sufficient
to assess long term trends with a defined level of confidence. Weather quality
is defined as measurements of quality sufficient to identify relative spatial
patterns and short term variation.
For more details, refer to Newton J.A., Feely R. A., Jewett E. B., Williamson
P. & Mathis J., 2015. Global Ocean Acidification Observing Network: Requirements
and Governance Plan. Second Edition, GOA-ON, http://www.goa-on.org/docs/GOA-ON_plan_print.pdf.'
title: Weather or climate quality
from_schema: OAEDataManagementProtocol
rank: 1000
alias: appropriate_use_quality
owner: DiscreteTAVariable
domain_of:
- MeasuredTAFields
- MeasuredDICFields
- MeasuredPHFields
- MeasuredCO2Fields
range: AppropriateUseQuality
concentration_basis:
name: concentration_basis
description: Whether measurements are expressed per unit volume or per unit mass
(for DIC, TA, etc.)
title: Per-volume vs per-mass based units
from_schema: OAEDataManagementProtocol
rank: 1000
alias: concentration_basis
owner: DiscreteTAVariable
domain_of:
- MeasuredTAFields
- MeasuredDICFields
range: ConcentrationBasis
required: true
analyzing_instrument:
name: analyzing_instrument
description: CRM-calibrated instrument used to analyze TA samples.
title: Analyzing instrument
from_schema: OAEDataManagementProtocol
rank: 1000
alias: analyzing_instrument
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
range: CRMInstrument
required: true
sampling_method:
name: sampling_method
description: Method used to collect samples.
title: Sampling Method
from_schema: Variable
rank: 1000
alias: sampling_method
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
range: string
required: true
field_replicate_information:
name: field_replicate_information
description: Repetition of sample collection and measurement, e.g., triplicate
samples.
title: Field replicate information
from_schema: Variable
rank: 1000
alias: field_replicate_information
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
range: string
analyzing_method:
name: analyzing_method
description: Additional information describing how the sample was analyzed. DOIs
provided as applicable.
title: Analyzing Method
from_schema: Variable
rank: 1000
alias: analyzing_method
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
range: string
required: true
observation_type:
name: observation_type
title: Observation Type
from_schema: Variable
rank: 1000
alias: observation_type
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
range: ObservationType
required: true
sampling:
name: sampling
from_schema: Variable
rank: 1000
alias: sampling
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
range: SamplingType
required: true
genesis:
name: genesis
from_schema: Variable
rank: 1000
alias: genesis
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
- CalculatedVariable
range: GenesisType
required: true
sampling_instrument_type:
name: sampling_instrument_type
title: Sampling instrument type
from_schema: Variable
rank: 1000
alias: sampling_instrument_type
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
range: SamplingInstrumentType
required: true
sampling_instrument_type_custom:
name: sampling_instrument_type_custom
title: Sampling instrument type (custom)
from_schema: Variable
rank: 1000
alias: sampling_instrument_type_custom
owner: DiscreteTAVariable
domain_of:
- ObservedPropertyVariable
range: string
qc_steps_taken:
name: qc_steps_taken
description: 'Describe what QC steps have been taken to improve the quality of
the data (e.g., DOI, software and settings used, outlier removal, etc.).
If quality control procedures are described in a separate document uploaded
with the data, provide the name of the document here.'
title: QC steps taken
from_schema: OAEDataManagementProtocol
rank: 1000
alias: qc_steps_taken
owner: DiscreteTAVariable
domain_of:
- QCFields
range: string
required: true
uncertainty:
name: uncertainty
description: 'It is recommended to provide uncertainty for each data point in
the data file. Else provide a single value representative of the dataset.
If uncertainty is provided as a variable, please list the column header name
here.'
title: Uncertainty
from_schema: OAEDataManagementProtocol
rank: 1000
alias: uncertainty
owner: DiscreteTAVariable
domain_of:
- StandardGas
- CO2GasDetector
- QCFields
range: string
required: true
uncertainty_definition:
name: uncertainty_definition
description: A description of the uncertainties involved in this method.
title: How was the uncertainty defined
from_schema: OAEDataManagementProtocol
rank: 1000
alias: uncertainty_definition
owner: DiscreteTAVariable
domain_of:
- QCFields
range: string
required: true
missing_value_indicators:
name: missing_value_indicators
description: The indicator used to represent missing values in the data file,
e.g., -999, NaN, etc.
title: Missing value indicators
from_schema: OAEDataManagementProtocol
rank: 1000
alias: missing_value_indicators
owner: DiscreteTAVariable
domain_of:
- QCFields
range: string
required: true
qc_researcher:
name: qc_researcher
description: The name of the PI whose research team QCed this parameter.
title: Researcher who QCed this variable
from_schema: Variable
rank: 1000
alias: qc_researcher
owner: DiscreteTAVariable
domain_of:
- QCFields
range: Person
qc_researcher_institution:
name: qc_researcher_institution
description: The institution of the PI whose research team QCed this parameter.
title: QC Researcher Institution
from_schema: Variable
rank: 1000
alias: qc_researcher_institution
owner: DiscreteTAVariable
domain_of:
- QCFields
range: string
dataset_variable_name_qc_flag:
name: dataset_variable_name_qc_flag
description: If applicable, the column header name used for the quality control
flag corresponding to this variable.
title: Dataset variable name (Quality Flag)
from_schema: Variable
rank: 1000
alias: dataset_variable_name_qc_flag
owner: DiscreteTAVariable
domain_of:
- Variable
range: string
dataset_variable_name_raw:
name: dataset_variable_name_raw
description: If applicable, the column header name used for the raw data corresponding
to this variable.
title: Dataset variable name (raw)
from_schema: Variable
rank: 1000
alias: dataset_variable_name_raw
owner: DiscreteTAVariable
domain_of:
- Variable
range: string
method_reference:
name: method_reference
description: Citation for the method used.
title: Method Reference
from_schema: Variable
alias: method_reference
owner: DiscreteTAVariable
domain_of:
- Calibration
- Variable
range: string
measurement_researcher:
name: measurement_researcher
description: The name of the PI whose research team measured or derived this parameter.
title: Researcher who measured the variable
from_schema: Variable
rank: 1000
alias: measurement_researcher
owner: DiscreteTAVariable
domain_of:
- Variable
range: Person
other_detailed_information:
name: other_detailed_information
description: Any additional information about this variable.
title: Other Detailed Information
from_schema: Variable
rank: 1000
alias: other_detailed_information
owner: DiscreteTAVariable
domain_of:
- Variable
range: string
units:
name: units
description: Unit of measurement for this variable.
title: Unit
from_schema: OAEDataManagementProtocol
rank: 1000
alias: units
owner: DiscreteTAVariable
domain_of:
- BaseVariable
range: string
required: true
standard_identifier:
name: standard_identifier
from_schema: Variable
rank: 1000
alias: standard_identifier
owner: DiscreteTAVariable
domain_of:
- BaseVariable
range: VocabularyItemReference
dataset_variable_name:
name: dataset_variable_name
description: The name for the variable as it is identified in the dataset data
file. This could be the column header in a CSV or the variable name in a NetCDF
file. Standard common recommended column header names can be found in protocol
documentation [here](https://www.carbontosea.org/oae-data-protocol/1-0-0/#column-header-name).
title: Dataset variable name
from_schema: Variable
rank: 1000
alias: dataset_variable_name
owner: DiscreteTAVariable
domain_of:
- BaseVariable
range: string
required: true
long_name:
name: long_name
description: Full descriptive name of the variable.
title: Variable full name
from_schema: Variable
rank: 1000
alias: long_name
owner: DiscreteTAVariable
domain_of:
- BaseVariable
range: string
required: true