Class: HPLCVariable
HPLC (High-Performance Liquid Chromatography) measured variable for pigment analysis. Always measured, not calculated.
URI: oae:HPLCVariable
classDiagram
class HPLCVariable
click HPLCVariable href "../HPLCVariable"
DiscreteMeasuredVariable <|-- HPLCVariable
click DiscreteMeasuredVariable href "../DiscreteMeasuredVariable"
HPLCVariable : analyzing_instrument
HPLCVariable --> "1" AnalyzingInstrument : analyzing_instrument
click AnalyzingInstrument href "../AnalyzingInstrument"
HPLCVariable : analyzing_method
HPLCVariable : dataset_variable_name
HPLCVariable : dataset_variable_name_qc_flag
HPLCVariable : dataset_variable_name_raw
HPLCVariable : field_replicate_information
HPLCVariable : genesis
HPLCVariable --> "1" GenesisType : genesis
click GenesisType href "../GenesisType"
HPLCVariable : hplc_lab
HPLCVariable : hplc_lab_technician
HPLCVariable : long_name
HPLCVariable : measurement_researcher
HPLCVariable --> "0..1" Person : measurement_researcher
click Person href "../Person"
HPLCVariable : method_reference
HPLCVariable : missing_value_indicators
HPLCVariable : observation_type
HPLCVariable --> "1" ObservationType : observation_type
click ObservationType href "../ObservationType"
HPLCVariable : other_detailed_information
HPLCVariable : qc_researcher
HPLCVariable --> "0..1" Person : qc_researcher
click Person href "../Person"
HPLCVariable : qc_researcher_institution
HPLCVariable : qc_steps_taken
HPLCVariable : sampling
HPLCVariable --> "1" SamplingType : sampling
click SamplingType href "../SamplingType"
HPLCVariable : sampling_instrument_type
HPLCVariable --> "1" SamplingInstrumentType : sampling_instrument_type
click SamplingInstrumentType href "../SamplingInstrumentType"
HPLCVariable : sampling_instrument_type_custom
HPLCVariable : sampling_method
HPLCVariable : standard_identifier
HPLCVariable --> "0..1" VocabularyItemReference : standard_identifier
click VocabularyItemReference href "../VocabularyItemReference"
HPLCVariable : uncertainty
HPLCVariable : uncertainty_definition
HPLCVariable : units
Inheritance
- BaseVariable
- Variable
- ObservedPropertyVariable [ QCFields]
- DiscreteMeasuredVariable
- HPLCVariable
- DiscreteMeasuredVariable
- ObservedPropertyVariable [ QCFields]
- Variable
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| hplc_lab | 1 String |
The name of the lab where the HPLC analysis was run (e | direct |
| hplc_lab_technician | 0..1 String |
Name and contact information for HPLC technician | direct |
| analyzing_instrument | 1 AnalyzingInstrument |
Instrument used to analyze the water samples or measure the water body contin... | ObservedPropertyVariable |
| sampling_method | 1 String |
Method used to collect samples | ObservedPropertyVariable |
| field_replicate_information | 0..1 String |
Repetition of sample collection and measurement, e | ObservedPropertyVariable |
| analyzing_method | 1 String |
Additional information describing how the sample was analyzed | ObservedPropertyVariable |
| observation_type | 1 ObservationType |
ObservedPropertyVariable | |
| sampling | 1 SamplingType |
ObservedPropertyVariable | |
| genesis | 1 GenesisType |
ObservedPropertyVariable | |
| sampling_instrument_type | 1 SamplingInstrumentType |
ObservedPropertyVariable | |
| sampling_instrument_type_custom | 0..1 String |
ObservedPropertyVariable | |
| qc_steps_taken | 1 String |
Describe what QC steps have been taken to improve the quality of the data (e | QCFields |
| uncertainty | 1 String |
It is recommended to provide uncertainty for each data point in the data file | QCFields |
| uncertainty_definition | 1 String |
A description of the uncertainties involved in this method | QCFields |
| missing_value_indicators | 1 String |
The indicator used to represent missing values in the data file, e | QCFields |
| qc_researcher | 0..1 Person |
The name of the PI whose research team QCed this parameter | QCFields |
| qc_researcher_institution | 0..1 String |
The institution of the PI whose research team QCed this parameter | QCFields |
| dataset_variable_name_qc_flag | 0..1 String |
If applicable, the column header name used for the quality control flag corre... | Variable |
| dataset_variable_name_raw | 0..1 String |
If applicable, the column header name used for the raw data corresponding to ... | Variable |
| method_reference | 0..1 String |
Citation for the method used | Variable |
| measurement_researcher | 0..1 Person |
The name of the PI whose research team measured or derived this parameter | Variable |
| other_detailed_information | 0..1 String |
Any additional information about this variable | Variable |
| units | 1 String |
Unit of measurement for this variable | BaseVariable |
| standard_identifier | 0..1 VocabularyItemReference |
BaseVariable | |
| dataset_variable_name | 1 String |
The name for the variable as it is identified in the dataset data file | BaseVariable |
| long_name | 1 String |
Full descriptive name of the variable | BaseVariable |
Identifier and Mapping Information
Schema Source
- from schema: OAEDataManagementProtocol
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | oae:HPLCVariable |
| native | oae:HPLCVariable |
LinkML Source
Direct
name: HPLCVariable
description: HPLC (High-Performance Liquid Chromatography) measured variable for pigment
analysis. Always measured, not calculated.
from_schema: OAEDataManagementProtocol
is_a: DiscreteMeasuredVariable
attributes:
hplc_lab:
name: hplc_lab
description: The name of the lab where the HPLC analysis was run (e.g., 'NASA_GSFC'
title: HPLC Lab
from_schema: Variable
rank: 1000
domain_of:
- HPLCVariable
range: string
required: true
hplc_lab_technician:
name: hplc_lab_technician
description: Name and contact information for HPLC technician.
title: HPLC Lab Technician
from_schema: Variable
rank: 1000
domain_of:
- HPLCVariable
range: string
Induced
name: HPLCVariable
description: HPLC (High-Performance Liquid Chromatography) measured variable for pigment
analysis. Always measured, not calculated.
from_schema: OAEDataManagementProtocol
is_a: DiscreteMeasuredVariable
attributes:
hplc_lab:
name: hplc_lab
description: The name of the lab where the HPLC analysis was run (e.g., 'NASA_GSFC'
title: HPLC Lab
from_schema: Variable
rank: 1000
alias: hplc_lab
owner: HPLCVariable
domain_of:
- HPLCVariable
range: string
required: true
hplc_lab_technician:
name: hplc_lab_technician
description: Name and contact information for HPLC technician.
title: HPLC Lab Technician
from_schema: Variable
rank: 1000
alias: hplc_lab_technician
owner: HPLCVariable
domain_of:
- HPLCVariable
range: string
analyzing_instrument:
name: analyzing_instrument
description: Instrument used to analyze the water samples or measure the water
body continuously. Instrument includes calibration information.
title: Analyzing instrument
from_schema: OAEDataManagementProtocol
rank: 1000
alias: analyzing_instrument
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
range: AnalyzingInstrument
required: true
sampling_method:
name: sampling_method
description: Method used to collect samples.
title: Sampling Method
from_schema: Variable
rank: 1000
alias: sampling_method
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
range: string
required: true
field_replicate_information:
name: field_replicate_information
description: Repetition of sample collection and measurement, e.g., triplicate
samples.
title: Field replicate information
from_schema: Variable
rank: 1000
alias: field_replicate_information
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
range: string
analyzing_method:
name: analyzing_method
description: Additional information describing how the sample was analyzed. DOIs
provided as applicable.
title: Analyzing Method
from_schema: Variable
rank: 1000
alias: analyzing_method
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
range: string
required: true
observation_type:
name: observation_type
title: Observation Type
from_schema: Variable
rank: 1000
alias: observation_type
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
range: ObservationType
required: true
sampling:
name: sampling
from_schema: Variable
rank: 1000
alias: sampling
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
range: SamplingType
required: true
genesis:
name: genesis
from_schema: Variable
rank: 1000
alias: genesis
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
- CalculatedVariable
range: GenesisType
required: true
sampling_instrument_type:
name: sampling_instrument_type
title: Sampling instrument type
from_schema: Variable
rank: 1000
alias: sampling_instrument_type
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
range: SamplingInstrumentType
required: true
sampling_instrument_type_custom:
name: sampling_instrument_type_custom
title: Sampling instrument type (custom)
from_schema: Variable
rank: 1000
alias: sampling_instrument_type_custom
owner: HPLCVariable
domain_of:
- ObservedPropertyVariable
range: string
qc_steps_taken:
name: qc_steps_taken
description: 'Describe what QC steps have been taken to improve the quality of
the data (e.g., DOI, software and settings used, outlier removal, etc.).
If quality control procedures are described in a separate document uploaded
with the data, provide the name of the document here.'
title: QC steps taken
from_schema: OAEDataManagementProtocol
rank: 1000
alias: qc_steps_taken
owner: HPLCVariable
domain_of:
- QCFields
range: string
required: true
uncertainty:
name: uncertainty
description: 'It is recommended to provide uncertainty for each data point in
the data file. Else provide a single value representative of the dataset.
If uncertainty is provided as a variable, please list the column header name
here.'
title: Uncertainty
from_schema: OAEDataManagementProtocol
rank: 1000
alias: uncertainty
owner: HPLCVariable
domain_of:
- StandardGas
- CO2GasDetector
- QCFields
range: string
required: true
uncertainty_definition:
name: uncertainty_definition
description: A description of the uncertainties involved in this method.
title: How was the uncertainty defined
from_schema: OAEDataManagementProtocol
rank: 1000
alias: uncertainty_definition
owner: HPLCVariable
domain_of:
- QCFields
range: string
required: true
missing_value_indicators:
name: missing_value_indicators
description: The indicator used to represent missing values in the data file,
e.g., -999, NaN, etc.
title: Missing value indicators
from_schema: OAEDataManagementProtocol
rank: 1000
alias: missing_value_indicators
owner: HPLCVariable
domain_of:
- QCFields
range: string
required: true
qc_researcher:
name: qc_researcher
description: The name of the PI whose research team QCed this parameter.
title: Researcher who QCed this variable
from_schema: Variable
rank: 1000
alias: qc_researcher
owner: HPLCVariable
domain_of:
- QCFields
range: Person
qc_researcher_institution:
name: qc_researcher_institution
description: The institution of the PI whose research team QCed this parameter.
title: QC Researcher Institution
from_schema: Variable
rank: 1000
alias: qc_researcher_institution
owner: HPLCVariable
domain_of:
- QCFields
range: string
dataset_variable_name_qc_flag:
name: dataset_variable_name_qc_flag
description: If applicable, the column header name used for the quality control
flag corresponding to this variable.
title: Dataset variable name (Quality Flag)
from_schema: Variable
rank: 1000
alias: dataset_variable_name_qc_flag
owner: HPLCVariable
domain_of:
- Variable
range: string
dataset_variable_name_raw:
name: dataset_variable_name_raw
description: If applicable, the column header name used for the raw data corresponding
to this variable.
title: Dataset variable name (raw)
from_schema: Variable
rank: 1000
alias: dataset_variable_name_raw
owner: HPLCVariable
domain_of:
- Variable
range: string
method_reference:
name: method_reference
description: Citation for the method used.
title: Method Reference
from_schema: Variable
alias: method_reference
owner: HPLCVariable
domain_of:
- Calibration
- Variable
range: string
measurement_researcher:
name: measurement_researcher
description: The name of the PI whose research team measured or derived this parameter.
title: Researcher who measured the variable
from_schema: Variable
rank: 1000
alias: measurement_researcher
owner: HPLCVariable
domain_of:
- Variable
range: Person
other_detailed_information:
name: other_detailed_information
description: Any additional information about this variable.
title: Other Detailed Information
from_schema: Variable
rank: 1000
alias: other_detailed_information
owner: HPLCVariable
domain_of:
- Variable
range: string
units:
name: units
description: Unit of measurement for this variable.
title: Unit
from_schema: OAEDataManagementProtocol
rank: 1000
alias: units
owner: HPLCVariable
domain_of:
- BaseVariable
range: string
required: true
standard_identifier:
name: standard_identifier
from_schema: Variable
rank: 1000
alias: standard_identifier
owner: HPLCVariable
domain_of:
- BaseVariable
range: VocabularyItemReference
dataset_variable_name:
name: dataset_variable_name
description: The name for the variable as it is identified in the dataset data
file. This could be the column header in a CSV or the variable name in a NetCDF
file. Standard common recommended column header names can be found in protocol
documentation [here](https://www.carbontosea.org/oae-data-protocol/1-0-0/#column-header-name).
title: Dataset variable name
from_schema: Variable
rank: 1000
alias: dataset_variable_name
owner: HPLCVariable
domain_of:
- BaseVariable
range: string
required: true
long_name:
name: long_name
description: Full descriptive name of the variable.
title: Variable full name
from_schema: Variable
rank: 1000
alias: long_name
owner: HPLCVariable
domain_of:
- BaseVariable
range: string
required: true